Mohit Sharma: Bioinformatician

Date:

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Mohit aims to gain comprehensive technical and research experience for the ongoing trends in the field of Computational Biology and Structural Biology and wants to contribute towards technological developments in Medical and Healthcare.

Education:

  • PhD (December 2017 – Dec. 2021): Overseas PhD Research Scholar (International Joint PhD Program School of Molecular Medicine, Medical University of Warsaw and Malopolska Centre of Biotechnology) at Malopolska Centre of Biotechnology, Gronostajowa 7A, Krakow 30-387, Poland
  • M.S. in Bioinformatics: Padmashree Dr. D.Y. Patil University, Nerul, Navi-Mumbai, Maharashtra

Fellowships/Grants:

  • Recipient of International PhD fellowship, Postgraduate School of Molecular Medicine, Medical University of Warsaw and Malopolska Centre of Biotechnology, Krakow, Poland
  • Recipient of visiting student fellowship at Institute for Advanced Biosciences, (sponsored by IAB) Keio University, Tsuruoka City, Yamagata, Japan
  • Recipient of Overseas trainee fellowship from A*STAR, Singapore

Work Experience:

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University of Jammu:

Worked as Research Associate in Bioinformatics Centre, School of Biotechnology, the University of Jammu

A*STAR, SINGAPORE: Worked on “Developing specialized ontologies for transcriptional regulation and will implement these in the text mining systems” for 6 months

Organization:   Institute for Infocomm Research (A* STAR Singapore)

Bioinformatics and Biological Technical Proficiency:

  • Software: Rasmol, Cn3d, PyMol, Chimera, ChemSketch, Autodock, HEX, MOE and SwissPdb
  • Biological Tools: SequenceAlignment tools in NCBI like Blast, Fasta and ClustalW, PHYLIP
  • Biological Databases: EMBL, DDBJ, RCSB, PIR, SWISS-PROT, PFAM
  • Clinical Research: Basic knowledge of the federal regulations governing the protection of human subjects e.g. FDA, GCP/ICH guidelines
  • Lab-Techniques: Protein expression (bacterial expression system), Protein purification (Chromatographic techniques including operations of FPLCs), Biochemical and Biophysical characterization of proteins, DLS, Negative Staining TEM, Western Blotting
  • Genomics: Basic Knowledge of Sequencing Data, Quality Control and data Filtering, Reference based RNASeq and Genome Analysis, SNP Analysis, Evolutionary Analysis, Protein Modelling (abinitio & Homology based)

Technical Proficiency (Computer Skills):

  • Operating Systems: Linux/Ubuntu, Windows
  • Languages: Python (Intermediate), R (Beginner)
  • Other tools: MS Word, Excel
  • CCNA Certification: DOEACC Centre Jammu, Govt. of India

Professional Skills:

  • Good presentation, communication and inter-personal skills including negotiation skills
  • Strong general computer skills, experience with databases and scientific applications, and ability to quickly learn and master various computer programs
  • Excellent organizational skills and demonstrated ability to complete detailed work accurately and record thoroughly
  • Outstanding communication and presentation skills, Experience working within organizational matrix framework
  • Solid written and verbal communication skills, as well as demonstrated professionalism in working with colleagues
  • Excellent interpersonal skills and ability to work with diverse group of staff
  • Good organization and problem solving skills  
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Publications Published/Accepted

  • Majsterkiewicz, Karolina; Biela, Artur; Maity, Sourav; Sharma, Mohit; Piette, Bernard; Kowalczyk, Agnieszka; Chakraborti, Soumyananda; Roos, Wouter; Heddle, Jonathan. A regular 3D lattice of gold nanoparticles scaffolded by an artificial protein cage with unusual geometry. Nano Letters. (Submitted- nl-2021-042225).
  • Dipika Jaspal, Arti Malviya, Amit Kumar Tiwari, Mohit Sharma* & Smita Jadhav (2021): Microbial consortia for industrial waste bioremedition: an insight to related patents, international Journal     of environmental Analytical Chemistry https://doi.org/10.1080/03067319.2021.1986703
  • A Pandey, M Sharma* 2021. Reappraisal of trifluperidol against Nsp3 as a potential therapeutic for novel COVID-19: a molecular docking and dynamics study. Future Virology, https://doi.org/10.2217/fvl-2020-0361
  • Veerala Priyanka, Neha Goel, Inderpreet Dhaliwal, Mohit Sharma*, Rahul Kumar, Prashant Kaushik. Epigenetics: A Key to Comprehending Biotic and Abiotic Stress Tolerance in Family Poaceae (Preprints ID: preprints-45537)
  • Mohit Kumar Sharma*, Manoj K. Dhar, Sanjana Koul 2012. Bioinformatics: An introduction and Overview. International Journal of Engineering and Research e-ISSN: 2278-067X, p-ISSN:2278-800X, www.ijerd.com Volume 3, Issue 8 (September 2012), PP. 88-99
  • Mohit Kumar Sharma*, Manoj K Dhar, Vladimir B Bajic 2008. Using Bioinformatics Tools to create a database for transcription Factors. Abstract Book of 3rd J&K State Science Congress 26-28 February, 2008

Manuscripts Submitted/Under Review/Revision

  • Sharma, Mohit; Biela, Artur; Kowalczyk, Agnieszka; Borzęcka-Solarz, Kinga; Piette, Bernard; Bishop, Joshua; Kukura, Philipp; Benesch, Justin; Imamura, Motonori; Scheuring, Simon; Heddle, Jonathan.  “Shape-morphing of an artificial protein cage with unusual geometry induced by a single amino acid change”. ACS Nanoscience Au. (Submitted-ng-2021-000489).

Book Chapters:

  • Gifty Sawhney, Mohit Sharma*. Molecular Structure of Coronavirus and Transmission; 5-16, Basics of Medical Microbiology and Virology, ISBN: 978-93-90847-58-7, Kripa-Drishti Publications, Pune-Maharashtra, India, August, 2021
  • Sharma, M*.; Abiha, U.; Chugh, P.; Chandrasekaran, B.; Agrawal, N., Bioinformatics in Cancer Detection. Computation in Bioinformatics: Multidisciplinary Applications, S. Balamurugan, Anand Krishnan, Dinesh Goyal, Balakumar Chandrasekaran and Boomi Pandi (eds.) (227–242) © 2021 Scrivener Publishing LLC. (Accepted in proof) Book ISBN: 978-1-119-65471-1
  • Kumar, S.; Shandilya, S.; Kapila, S.; Sharma, M*.; Agrawal, N., DNA Microarray Analysis: From Affymetrix CEL Files to Comparative Gene Expression. Computation in Bioinformatics: Multidisciplinary Applications, S. Balamurugan, Anand Krishnan, Dinesh Goyal, Balakumar

Chandrasekaran and Boomi Pandi (eds.) (137–152) © 2021 Scrivener Publishing LLC (Accepted in proof) Book ISBN: 978-1-119-65471-1

  • Yadav, R.; Sharma, M*.; Agrawal, N., Machine Learning in Bioinformatics. Computation in Bioinformatics: Multidisciplinary Applications, S. Balamurugan, Anand Krishnan, Dinesh Goyal,

Balakumar Chandrasekaran and Boomi Pandi (eds.) (153–162) © 2021 Scrivener Publishing LLC

(Accepted in proof) Book ISBN: 978-1-119-65471-1

  • Sawhney, G.; Sharma, M*.; Agrawal, N., DNA-RNA Barcoding and Gene Sequencing. Computation in Bioinformatics: Multidisciplinary Applications, S. Balamurugan, Anand Krishnan, Dinesh Goyal, Balakumar Chandrasekaran and Boomi Pandi (eds.) (163–226) © 2021 Scrivener Publishing LLC (Accepted in proof) Book ISBN: 978-1-119-65471-1
  • Bhardwaj, R; Sharma, M*.; Agrawal, N., Bioinformatics and Its Application Areas: Multidisciplinary Applications, S. Balamurugan, Anand Krishnan, Dinesh Goyal, Balakumar Chandrasekaran and Boomi Pandi (eds.) (121–137) © 2021 Scrivener Publishing LLC. (Accepted in proof) Book ISBN:978-1-119-65471-1.
  • Gauri, Mohit Sharma, Neha Goel. Chapter: Analysis and Interpretation of Metagenomic Analysis. Springer Book: “Genomics Data Analysis for Crop Improvement”. (Submitted-under review).
  • Gifty Sawhney, Mohit Sharma, Neha Goel. Expression profile of coding and non-coding RNA Springer Book: “Genomics Data Analysis for Crop Improvement”. (Submitted- under review)

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